NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180059_1141770

Scaffold Ga0180059_1141770


Overview

Basic Information
Taxon OID3300016695 Open in IMG/M
Scaffold IDGa0180059_1141770 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES164 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)981
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Madison
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013867Metagenome / Metatranscriptome267N

Sequences

Protein IDFamilyRBSSequence
Ga0180059_11417701F013867N/ATNSKMAFNFDKFESEFKQKRLFQSVAQLFGALRDPADQNARLLGVEPGDPLTQFMEQLRIGTEEPVAEFDFQLGEPVTIETAGRLCRDRRVNGAPAPVNLPAMLVTAGQRLFFNTALQQPETYVEIARPEASDLPSEIAVCHFLDGAKTVIDWALSLPKFKALAQERVYTARMAQQALHRLVSRFTPEHSHLVSDMTANEMANYLLRTETNRDKTAYRRKELHELVRKPDMELRAPLTTARRLIDVIYPADRAGTETQRSTVWRTAIISFLPDEIAIPLSDRLKVANEICQPITDDELEAMAYQAEEVYRKPPPFPLKFGRNIGSI
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