NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180057_1114351

Scaffold Ga0180057_1114351


Overview

Basic Information
Taxon OID3300016697 Open in IMG/M
Scaffold IDGa0180057_1114351 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES156 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Madison
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0180057_11143511F013634N/AMAIQLGPLVGAGLGALQQSKIDKALAGEKTYTKPKTIFGKLIGGVSGRTAAAEASAQTKTAPLSNTVMNSLQPSAKSQSTPITGGFSFGGEATRKTYLPFAIVAAVIAAFYFLRKKGGRRRR
Ga0180057_11143512F031456N/ALIGSFPASSSAVFNLDFLPEKFLVGGAADSSQYLSNFSVVTSGVQLMSITSVDRLTALSRFDSGAILSEPSALNISRVASYLRLATGRINKATTITGTNSLAIVGDAYAASTNISNVARRAVEQSINASANATFDNFEALIFSPTNILRAQITFANGFSDEFSVPEIKALYSNYHVTDNDSMLEGLLVIDADSGAGLISQVVLFNGSGGSTVVLKSDYVQL

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