NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180058_1155869

Scaffold Ga0180058_1155869


Overview

Basic Information
Taxon OID3300016699 Open in IMG/M
Scaffold IDGa0180058_1155869 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES160 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)659
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Madison
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042706Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0180058_11558691F042706N/AAKPNYDITCDSPDWGLSNARLRCSTFGGKDKAIEVADAGGWTHAYQEIAVVPDALYRLSDAFYPLVIGECDGSAGVKWCSPSVVVCPGPYNGDYFNKGGCLVGLAPSGKDAWEPFKTTFAADVNMVTVYINQESTTYSSVVADLSVQQIVAKPNYDITCDSPDWGLSNARLKCSTFGGKDKAIEVADAGGWTHAYQEIAVVPDAVYRLSGAFFPLVIGE
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