NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181515_1056727

Scaffold Ga0181515_1056727


Overview

Basic Information
Taxon OID3300016730 Open in IMG/M
Scaffold IDGa0181515_1056727 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34933
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (70.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F000540Metagenome / Metatranscriptome1043Y
F045254Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0181515_105672711F045254AGGAGGMIKARSFLLALCVLLCLTLVAAAQNPSPKPAPPAAAANSRYQLVPAQVDSLTGGTVQHTVFLLDTQTGKVWKYVASGQPKTLKDKDQTTDLSGGSTIIGLTPGTFVPVDRIEFAPPKAGGDK
Ga0181515_105672718F000065N/AMAHLTNNAIPTLPKSPQPPLSHPGATRDSDRAKRPSLVQPSAPDSELNPGDRVEGLANFGKPTGEFGTVVQTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPFAKPASA
Ga0181515_105672735F000540GGAMAKKKAASLPPKLTEVEQDLLSHIQDGYQLETDSLGGNPVLRRLKDDEGIRPLSANRNTIKALEQRGLITPGKGRDPLAIVWRLKKKQP
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