NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181515_1372146

Scaffold Ga0181515_1372146


Overview

Basic Information
Taxon OID3300016730 Open in IMG/M
Scaffold IDGa0181515_1372146 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1226
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001133Metagenome / Metatranscriptome767Y
F026357Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0181515_13721462F001133AGGMWIEKLSDGVVELDTPIGPRYVQPNLVQRAYLIWTFRNFFSLPQQVLRPWERRLINRLWSENNFVSMPAVGADERPVIGRIEWRVPAQAEVLPIRKPISGAKPSAAGQSREAASA
Ga0181515_13721463F026357N/AGIFLYSESEVKAGSKLELVIMLPPGLGLGPGGWTLCEASVVRVRESEGKGMGIAATIDRIELLPELS

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