NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182079_1201475

Scaffold Ga0182079_1201475


Overview

Basic Information
Taxon OID3300016741 Open in IMG/M
Scaffold IDGa0182079_1201475 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071410CT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)807
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022603Metagenome / Metatranscriptome213Y
F068249Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0182079_12014751F068249N/AGTNTTLLAFEASNYDYNVEHNCGGDETKCYNLTDAQKEALFTVVDKYKFIEGNYEATMIQGVGHAYCDSGIISDAWAVEDVQILSEYLRDTVASTVNKKNKYGIVDETSVFYETEIVHTVGDSIINMHTDGKRTHMWHNLFIADMEEALNIDDIETWASYAWDLESYMYENK
Ga0182079_12014752F022603GGAMHTLFKKEREMQVHVLQLQGTGDDEYAWEIAAVCADYRDAVDKLAEINADYKDVDSAFFKLNENARIETHNVVDNYWGL
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