NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181505_10929165

Scaffold Ga0181505_10929165


Overview

Basic Information
Taxon OID3300016750 Open in IMG/M
Scaffold IDGa0181505_10929165 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)991
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N

Sequences

Protein IDFamilyRBSSequence
Ga0181505_109291652F002261GGAMPNWPSIEAFVDGVISQTFGEPVVYQPVQAGSAQGSAFTVTAVRHLRAREESGAMANFEEISVNPSNFANPPAKGDWVTAWGAQYVVTTVRQPDAYGMLNLALLQRAS
Ga0181505_109291653F003186GAGVINPKTILGEWVTALQSCPDLVDALGGDGDNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSSIPTGAPSWSSLLHFQIDPNCYPMDMDLPSAQRNTVVVSADGATLDYFEV
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