Scaffold Ga0186280_101346

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186280_101346

Scaffold Ga0186280_101346

Overview

Basic Information
Taxon OID	3300016814 Open in IMG/M
Scaffold ID	Ga0186280_101346 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with artificial seawater, 25 C, 31 psu salinity and 699 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0134_2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	689
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	21.25	Long. (^o)	-158.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018723	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186280_1013461	F018723	N/A	TSLTGCSLPLGPVMPDKKEASSKKGKEPFTSQYEVKDVFPHFCDRKTKLLALQDVPYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQSWVEEHGKNYVKSYDDAFSAVGTLLHEGIIGDPSGRVQIPFLRHLVSEVGDKIKLDTFDKIIKGGDSAVAVGIKGDSCSLDEFLTFLQK

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