NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186368_101055

Scaffold Ga0186368_101055


Overview

Basic Information
Taxon OID3300016923 Open in IMG/M
Scaffold IDGa0186368_101055 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from North Atlantic Ocean in L1 medium, 16 C, 25 psu salinity and 192 ?mol photons light - Alexandrium minutum CCMP 113 (MMETSP0328)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1365
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)42.23Long. (o)-8.8Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001544Metagenome / Metatranscriptome673Y

Sequences

Protein IDFamilyRBSSequence
Ga0186368_1010551F001544N/AKASSGPLAKSKGASKILKPKAASKKDAPLKKIRVGILVGKDFDPVKKGTHWPDFPERYVLTQEDWGKHSVDVCTALRMQQLHPDLLDIDIIPGKEITQKRLQKNHVNLNFWYDVGVAMMHGGKSHIAEVMRCHKNPDCRLDPSWDYYDWVLCKPRYMEQCKKAGIPTIPTVVYKNGFEPAQCMKDVQRLGWEKFFVKVGHFSFFGEGAVHGKTEDFLGPRAKDLEAYAKANKKSSIFLLQPYTLKPNGEVFDEVRNFFIDGQWRYSVFTHGTDETDAGYYEEPEGPRKAACKALAEKVYQEVLKAATWQGKRQTPLLNRIDIGIIPKKGGDSLNKTDNAYFLNEVELIMTTWLDRYAPISVQDVMAQASVKHTLELLAGMLNAKKRVPDEASVRKAVNTLNSRLGPFKHIKVKA

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