NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186657_113801

Scaffold Ga0186657_113801


Overview

Basic Information
Taxon OID3300017044 Open in IMG/M
Scaffold IDGa0186657_113801 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from Seto Inland Sea in f/2 medium with seawater, 14 C, 36 psu salinity and 214 ?mol photons light - Skeletonema japonicum CCMP 2506 (MMETSP0593)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameJapan: Seto Inland Sea
CoordinatesLat. (o)34.3Long. (o)132.4Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099352Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0186657_1138011F099352N/AMVFNGAEAFKGASAPSLEREVSVTSNNNRALLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQYEAVKSCLSDNPDEWAKCASMRRELEVCSVKNNLGELKKLSS
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