NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186252_110313

Scaffold Ga0186252_110313


Overview

Basic Information
Taxon OID3300017062 Open in IMG/M
Scaffold IDGa0186252_110313 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with seawater, 2 C, 33 psu salinity and 569 ?mol photons light - Phaeocystis antarctica CCMP 1374 (MMETSP1444)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)728
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameRoss Sea
CoordinatesLat. (o)-77.8333Long. (o)163.0Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010660Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0186252_1103131F010660N/AAYLRSAMQLFALLSLVGGASALIASPMAAHATQQRVAVSPMMACNGGKGGSGGEGPPLDKMRRGRVKALIQAADDADKVKAILLSSQTERLLLNTNWKVRSNLNMHLRKRATQFGVEVPMEFGAFNIRPRNTPKAQLKPTVMTETAPHPDAVAALARLRFC
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