NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186203_103363

Scaffold Ga0186203_103363


Overview

Basic Information
Taxon OID3300017101 Open in IMG/M
Scaffold IDGa0186203_103363 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in Artificial seawater, at 27 C, 30 psu salinity and 596 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0326_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1012
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016530Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0186203_1033631F016530N/AEGSCLNPWPPNQFLIRWSRQAFRREVLQLLRFLRXXXXWDMLGLSLPDGISEKSLSVKNGQVVLLTAGDWFSSQTSLEVDKRDAYRQQWQYEAEARLARVEAKKSPLEKSGEGLTAQKFSWSKDGQKPFEWRKLYHALVGGVGGLPDGGIITETVFNPTVMRMYTDHRVMGNIVLPGVSHVSLMAATGSVGFPNPGGISSEWHMSIKETLFERPYIVNSGAELIAAIQSGADPSQVGGMTPVGVPVVYCRATTVTKERGQIKPTIDWAK
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