NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186409_110662

Scaffold Ga0186409_110662


Overview

Basic Information
Taxon OID3300017179 Open in IMG/M
Scaffold IDGa0186409_110662 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater, 21 C, 33 psu salinity and 136 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0944)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameIrish Sea
CoordinatesLat. (o)54.085Long. (o)-4.77Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098706Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0186409_1106621F098706N/AMLSASLFALAANRAEVSTGNLRGDNKFDNLKANWDKSVSIGDFKTTVKAKYDYNANRDFLKEVSISGDLKQADNADDIAVGYELTRDFASRNTNVRLTASSHGYSVSAEYDPEEQLREVGVAREVDVGDYKVDLQPTWLVKAKAARVKLMSAINDGKDRLSAQFDYDVDGQQAKDVELSFARTLEEGKVLSASFKPDKSNLEVSLEDSTFEAGATWTATANVPLDSDPSNILDAARVTLKRSWGW
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