NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0186679_109616

Scaffold Ga0186679_109616


Overview

Basic Information
Taxon OID3300017222 Open in IMG/M
Scaffold IDGa0186679_109616 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from North Atlantic Ocean in L1 medium, 22 C, 32 psu salinity and 705 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0259)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1685
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)41.56Long. (o)-70.583Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001767Metagenome / Metatranscriptome638Y

Sequences

Protein IDFamilyRBSSequence
Ga0186679_1096161F001767N/AMALQEPLQGYKKLSSGSGRGKVSIFYGADEYLDELRKKFENDPEIAAMKGILPDEGDPNAAKVQSNSKMLSVQKNSENRSHKTGRLFPTPNKPDPMPAELAFLFTKITPEQMMYMWNILTLIFVSQCMMIIAYCAALACFPAYFWTCTITFGVPFAYLAIQHIYVDHDVMHGATFPPYSWQKYLTHPFSDFISLPWEEFVLEHNRHHASTVDLLQQGEFGWDPEEFQYWMLEWTWRHRQYPFPIHPFGLLLTGCMVPVIHFFGLNDTGSLFALEWYFHFPDAGAGGKCNKEFWKKWVPRRCLHTAFVWSLWACVWLLGTWPLGRPLSEGWRFLLPVTCCARIGYSAAWMFITNFTHSHPWNKFLATDPERTWPVLHETMAFVLGGKHRWNEMLFHDLHHAFPNAVGTLSQRGRFHGWRKVHDAALEVLHRGLWKANGDEETEMQKTQRKRSLLMKQNMAK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.