NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186087_1007471

Scaffold Ga0186087_1007471


Overview

Basic Information
Taxon OID3300017274 Open in IMG/M
Scaffold IDGa0186087_1007471 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 18 C, 32 psu salinity and 229 ?mol photons light - Prorocentrum minimum CCMP 1329 (MMETSP0055)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1518
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058162Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0186087_10074711F058162N/ASDSRGILSAIGRLDCARMVKIRVGFICGKDTDFVEHPGKGPLYAKIGDLAFLADLPDKWRVDPVSHEYLMDCEPGTKGQAHCDVALAWFIKKKYKDIEVDIITPEELTVERLHANDLNFTMGYNAVNIKVENNASGPAKMRAFTKAKNIFPTWEAEEFILQKSNYMQACMDAGVPMAPTIFAKKGSRSPTGLMKQIKDRGWKTFVMKQSESGFSLGFCKLSVEQCDADPSILATYFKDYAHCPEFVVQEAIDGFTRNWETRCFWFNGKFLYAIANIAAVSSKGSKERIVTGDDIPAEFLENAKRIGRQAIKVLPDLKTGGAPVKNVLVRTDVGCSDSQLHDKYTNWDPKKKTFFLNEIEPSSTTYFVRWLKFDCIPMYAKLYAEKAREIYRAMKAKKPATTRAGSKTGKVRAKPAASTKVLKTGKLKTKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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