NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186171_1021679

Scaffold Ga0186171_1021679


Overview

Basic Information
Taxon OID3300017284 Open in IMG/M
Scaffold IDGa0186171_1021679 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 4 C, 31 psu salinity and 530 ?mol photons light - Geminigera cryophila CCMP 2564 (MMETSP0799)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)882
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077369Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0186171_10216791F077369AGGAGMVQVVDYGTVPAARPQLTAKRVGFIRFAAVATLALGALAAVIVVGQVRPVELGMAPINEAGTGGYAVGDMGSTNNVDTLKNIWYDDTEAWEGIDEVLPTAGGAWEDQNEPDVGYAFQNAGSVTAENGWTGYYDTTLHDGTDREVFPDETVNGINGWDSDLAGANALWGNRGGQNVDDPASWSNGEPLTVQQFSDSDYVPYGYTLGGPSHSSVGDESAGR
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