NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186371_117895

Scaffold Ga0186371_117895


Overview

Basic Information
Taxon OID3300017289 Open in IMG/M
Scaffold IDGa0186371_117895 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from North Atlantic Ocean in K medium with artificial sea water, no silicate, 21 C, 35 psu salinity and 466 ?mol photons light - Isochrysis sp. CCMP1244 (MMETSP1388)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)822
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)38.3048Long. (o)-69.6192Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008013Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0186371_1178951F008013N/ASRMSATQSARPSVQPDLTPSALSEPPESLLGAVQQAIFVEPYPNCKACGEVAGYISPFEVSPGCYKILAEDDDWITGVLTMAVGEKDLLHHHKDHLIYVLEGDGVTIYPGGDESAAMVVPLQVGAGIPAPMSAPPFAKHTLLNSGTVPLKMVFFEAKK
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