NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186338_1022867

Scaffold Ga0186338_1022867


Overview

Basic Information
Taxon OID3300017299 Open in IMG/M
Scaffold IDGa0186338_1022867 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from northern Puget Sound, Washington in Ciliate medium, 15 C, 30 psu salinity and 405 ?mol photons light - Strombidinopsis acuminata SPMC142 (MMETSP0126)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: northern Puget Sound Washington
CoordinatesLat. (o)48.608Long. (o)-122.769Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000457Metagenome / Metatranscriptome1112Y

Sequences

Protein IDFamilyRBSSequence
Ga0186338_10228671F000457N/AEGAIHGKTADFLSTRAGDLKAYAKANKTSKVFLMQPYTLKPNAEVFDEVRNFFIDGEWRYAVFTHGTDGSDAGYYMEPEGPRKDACKALAERAYQQVLKTCKWQGKPINPLLNRIDIGVIPAKGGDSKHRTDNTYFVNEIELIMTTWLERYSPLSVHDCMAQASVKHSLELLVGLLNAKKRVPDEANVRKAVKVLSQRLGLKHLKIKA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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