NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186119_1034985

Scaffold Ga0186119_1034985


Overview

Basic Information
Taxon OID3300017311 Open in IMG/M
Scaffold IDGa0186119_1034985 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in HESNW medium w/o silica, at 18 C, 30 psu salinity and 654 ?mol photons light - Protoceratium reticulatum CCCM 535 (MMETSP0228)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)672
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001618Metagenome / Metatranscriptome662Y

Sequences

Protein IDFamilyRBSSequence
Ga0186119_10349851F001618GAGGMWRPDAGPCVAQVAEWGEHPDDVEYMRMLKAMPKKILKRREIICKDKDLEKATQKQGKVHFSICVWNLSEYSKSGGLSDEAASMIHVFYESKDERKVLNAFASAGIDLESAEAVPVDPNSSIPHEQNIMYTKENLYLQDTFSWEEGPPLGADELKSRFFKR
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