NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186256_110352

Scaffold Ga0186256_110352


Overview

Basic Information
Taxon OID3300017332 Open in IMG/M
Scaffold IDGa0186256_110352 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Puget Sound, Washington in HESNW medium w/o silica, 16 C, 30 psu salinity and 231 ?mol photons light - Noctiluca scintillans (MMETSP0253)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: Puget Sound, Washington
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016002Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0186256_1103522F016002N/AAASLGWTGVVALCADGMLSAHLEHILQCCRCAACDNHGGQNELQIQYGADVAGMNNSKAIQNDRFVRLGDPTDAANPRHQITQTDSFDITFTPRSFSNYSNRSTPMRSMTPRQKDLRDHLELPLLHTYPLPPICSPDEPEEERKKKLLEMYQEFALDLHTGMYLTQLTSSRDYSDIHCQLMEDLQTLKLDQSNGRIVEFPLTGVSKVYRIVKNDEKWYSAASGATGINTEHIVVVEFMRRKLAFVFKELQVAQRFLLCMELLIRRAQQKQAQKALRSLTPAFPPSSGGTGRDDCSTPRQVRDAQQRSGCVAVP
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