NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186678_1023164

Scaffold Ga0186678_1023164


Overview

Basic Information
Taxon OID3300017345 Open in IMG/M
Scaffold IDGa0186678_1023164 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from North Sea in half strength K medium with seawater and selenite, 15 C, 32 psu salinity and 294 ?mol photons light - Azadinium spinosum 3D9 (MMETSP1037_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Sea
CoordinatesLat. (o)57.0525Long. (o)2.50056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017832Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0186678_10231641F017832N/ASEMFLFNAAVMGFANQSWMTEVLASFDAMVRNVSNSSRLQEECDILSLRIAKCRGPINLAEFKAVMLASLRSLVPKDWNSEHEVAWGWLWENVERMVKALMGKPAVQQRALEKLYGSFVEEQRALLRREVYAKFFALAPAGQDFFKQSTTRLHFIADKIVAMTLEIYKSPQKMVEXXXXWVSATSATASPQSSSAPL
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