NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186040_125105

Scaffold Ga0186040_125105


Overview

Basic Information
Taxon OID3300017346 Open in IMG/M
Scaffold IDGa0186040_125105 Open in IMG/M
Source Dataset NameMetatranscriptome of marine host-associated eukaryotic communities from unknown location in f/2 medium with natural seawater, 50% L1 mix, no silicate, at 26 C, 35 psu salinity and 361 ?mol photons light - Symbiodinium sp. C1 (MMETSP1367)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001051Metatranscriptome792Y

Sequences

Protein IDFamilyRBSSequence
Ga0186040_1251052F001051N/AMGNTLSSDTLPVLCTMVDVHNPKAQDMFYFCNVSSGGAATKVIGRSQTLSVEVSINTVLSFTVYECPEPVFTPETARCLGLLRVPVERLAERYSSGIFQQWFNLDTKTDPRMPAGDLQSLISRFEQAYSDAVQDVYQPKICVSIIGTAFEVQRGTRQTCSIFVGEDVKTQAGPDLKALIASHKQQAAYIDSLHEEIRRFNTPSYRPLSVSQGIEGMSGVSKPPNAPMPNPGGFQPVPSSMGY
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