NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186619_1022169

Scaffold Ga0186619_1022169


Overview

Basic Information
Taxon OID3300017355 Open in IMG/M
Scaffold IDGa0186619_1022169 Open in IMG/M
Source Dataset NameMetatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 35 psu salinity and 742 ?mol photons light - Karenia brevis SP3 (MMETSP0527_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1224
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015603Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0186619_10221691F015603N/AQFCPADSFPVGVDGMELHERAHRWQPTCRQQLAGGRPVPMASPRRSARRAAPALLAALAMLTRAPVSHAAGHQGSVCAHELDTERVSPQTEIRDGETVYRDIRSNNTHRYFYSNFNVTTMNQPDEFRKLIINLEPCKGIVYLFVRKTRRCWPNPYSCIDVTPGKQRRVPAECKWTHFMSRIEGDRDGTPTFFEVPLSSTKYFISVYAPERSSYTLTMLADIGAFPRPGAEGRITARQMKELQVQISWDEAHFFPLGISRVKQYWVYSAMLLESDNRSNMAVFMRPDKIMNTVCGLQNNTDRQYDRVPAAMCSYGKCNATIDGVITEQRYVFNVVVESDRGFRMAYSGLVMRTDWTVIRQATSDKTVKVIGAVSGSVLGMVIIIYFFMLKLFG
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