NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186026_1017400

Scaffold Ga0186026_1017400


Overview

Basic Information
Taxon OID3300017359 Open in IMG/M
Scaffold IDGa0186026_1017400 Open in IMG/M
Source Dataset NameMetatranscriptome of marine sediment eukaryotic communities from Tyrrhenian Sea in L1 medium with seawater, 20 C, 33 psu salinity and 588 ?mol photons light - Alexandrium andersonii CCMP 2222 (MMETSP1436)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameTyrrhenian Sea
CoordinatesLat. (o)40.75Long. (o)14.25Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025639Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0186026_10174001F025639N/AMQFRGVLAATLAFAVVAHRDVRKTKLDINQKVFIENAPVLGAGAGDGILNTCQGFAKQHVANADAPHVKVCGTGIKATFFLRGRCEGYYEHSKVVGKCDSKMGPSTCDEWSPADDARFGHYQSYKVEQC
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