NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186377_1009178

Scaffold Ga0186377_1009178


Overview

Basic Information
Taxon OID3300017373 Open in IMG/M
Scaffold IDGa0186377_1009178 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with seawater, 22 C, 33 psu salinity and 574 ?mol photons light - Brandtodinium nutricula RCC 3387 (MMETSP1462)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1552
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.683333Long. (o)7.316667Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064392Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0186377_10091781F064392N/AWASLASRLRGVEGHAFASPWPRPCTRSGSRPRAPCARXXXXDVHAGGFYTDETHDVPPVITVAGRHKDRENQDLQGEYIRHTNFHGRPAYRKPGTRTCIRYWSTADRWLIDREGLQESDTCNAYAEEGGAPHPAGEDLVWRVWETKHKQHMRDPEMLVTSCPSTIQVVGRASGRENYALNGTYKLVGLHQGKVAYQKEGEKHAIRYWAPGDRWLIDLEGLRDMDVCNAYADANSSKHPGVTGLVWHVWDSARSKHIMDSTLQTIMAPPVIELVGREAPKENVTMNGTYHLVGIFAGRPAYMKADGSGHAVRYWPREDRWLVDLDGLRDVDLCNAYADAQPGGCHPGDLNLVWNVWETSRGRHLTDQSVRTFVAPHWVRITGRDSVKENSSMNGDYRLVEVIEGKPAYKKDDSDHVIRYWPGEDRWVIDLEAGFAGGDIANAYADAKGADTPGNIELLWYVWETSRAEHTPDEDVIAEPVWLDQPDWAQVAKPGPRRELQGADGNGQLR
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