Scaffold Ga0187308

Basic Information
Taxon OID	3300017469 Open in IMG/M
Scaffold ID	Ga0187308_11752 Open in IMG/M
Source Dataset Name	Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Stanford University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21418
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (54.05%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

21418

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (54.05%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location Name	YNP, Wyoming, USA
Coordinates	Lat. (^o)	44.428	Long. (^o)	-110.5885	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

YNP, Wyoming, USA

Coordinates

Lat. (^o)

44.428

Long. (^o)

-110.5885

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1175210	F061983	AGGAGG	LKKYIFKVKTVPIKLTNEEGLLSEQEFQDLKKTGIYKGMKILEIKDLGYDIYWRFVHYYELVTISEGKGLFDCYYGDTIIVEKLKNVEAIVVKENNSEPIKTMKTLVAKWYNKKLIEEEKAYELCNKFVM
Ga0187308_1175211	F080247	N/A	MIVWGKVIECIIDTDVNYLNSEFFGNPLRIKGKFLVFGNFYTFERTLSEAGTEQVCVPIDATFIAYYQSMVAIISFYIKERDIYANISLTDPDTIKEFITMSTYYRRYGVSIPNVLDKIMYRKVPT
Ga0187308_1175212	F076263	AGTAG	MLSAEDLSAVLDDLEDLCARLPEGVTFHPTLEIHRHYANEEATYIKFDCRNHKYILTIVRTGVAKTTRVSSREELFRRVFPEYSPGFTGSYTEEYWGEE
Ga0187308_1175213	F081547	GAG	MSYLRGVFVHFGDETYYLSCGIVKGGNLDAETYTINNPEMMVVRLGRDIYIVTSDLRQLVPVEPIRVLLDSETSKVYNEIVMQGNEVKPT
Ga0187308_1175214	F087442	GAGG	MREGLVKAGNLVIDCKPCYIIGTGFTKDDIYIISEGTVVFKWYDKIAVIVVGEEGTKINLLDIIDVRFLVERNENCLVTKL
Ga0187308_1175215	F080245	N/A	MIFIWSARVIIPGFRDEIFISPALINMYTQLTEDVYEAGMFMVPHRGHALLFLPTMIIKFDDQLLKQLEETSIEDLNYPLNTIDHVFT
Ga0187308_1175216	F075084	GAG	MRPCRKDLCLLYSLGVDYAKLMDFTNENPQGILFRRAERAIIYNRRITALWYGYDTGMLIESVLRRILKRSITYCNLMKKLGVESEFCRRFTYYDEVQCENISEYDVDVAYADITHMIADYNNETASEIFTKMIKECSTYEVR
Ga0187308_117522	F076264	N/A	MVNGLQNLFVALVDVFANAVNAIGNTLSSLATPIGYLVGVLAVFGSLISIIYYVFRGRGGVSGLVGGLKGFFTSFL
Ga0187308_117524	F087445	N/A	MSSSSSKPTDDLVQRLMNMSDYDLKRLFKMLPIDKRLILAMDAIQEYQNIRNRFDNLFNSFAMNSPKVREVVDSARRNRKPIDRLADMFMDMMETMLKSKAMSLTDEDKVKLKEKLKEVMESEE
Ga0187308_117527	F063848	GAG	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEQSATRRNQRAVNGFTVLKQVQQTVRDYLNEVSQSMKAPVIAQLAVEFLGVSMAYLKGSNEGYNSYALTGRVAQIATLKATGIINTTTLNCSQVGEIINGMLKKISGATEDPLSFTEEDGVCKATVANPLPKLSIASTSTGYTISLADILKAKTPEEVLMGK
Ga0187308_117528	F085905	N/A	MEKELLFPSSRLSQFDYVVMNAYWLNVRLKYFTDPILYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQEVMKSIVQFMNDKLKIIDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDAEVVFQGVVARHLLPFSVLEVIRRHLKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187308_11752

Overview

Ecosystem & Geography

Associated Families

Sequences