Basic Information | |
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Taxon OID | 3300017469 Open in IMG/M |
Scaffold ID | Ga0187308_11895 Open in IMG/M |
Source Dataset Name | Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Stanford University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12311 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (57.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities |
Source Dataset Sampling Location | ||||||||
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Location Name | YNP, Wyoming, USA | |||||||
Coordinates | Lat. (o) | 44.428 | Long. (o) | -110.5885 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F056742 | Metagenome / Metatranscriptome | 137 | Y |
F070317 | Metagenome / Metatranscriptome | 123 | Y |
F077499 | Metagenome / Metatranscriptome | 117 | Y |
F077502 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187308_1189510 | F077502 | GAG | MPGHGTDTARIIIWIEKNLPEEGKLSELIDSIFSLIQEIILNNLSQGKQPISFTSVREIADTFKEITYRSIEQSIGVLTDEVKEQIDTYFFRKLSEIHDKYYE |
Ga0187308_1189511 | F070317 | GAGG | MKTTVNNMSALEELKELNLEKITKDAQEGDICVVDKILKGKLMDLMPLIRDPANLSQKAMDFIKSRGEDIFYLIQCTTRESRNVKLLIRQSFDPKSTFYNLMKKYKTIKVGDEITVFYNPEKRRYDFLL |
Ga0187308_118957 | F056742 | N/A | MFIAEVEKVYGVKVKSCEEFCKFYILFLAVAEMLYGKHYNYAIFKTIMRGRPNLYMCVKCSSVLTAEESITHTLQHMKQLGYKPLTYEENI |
Ga0187308_118958 | F077499 | AGG | MADLFVFPHESLKLVSYPNITNAEIIFILTISIPIGNHPESDDPMDEKIRFLSTYTPLEFQKLHYIKTIDKALDILKHFLYTREDNVLFEIANKINNLYDIKELTNKVKDVECTKDLKQINVTLTEAKRYIYPDLSLSKYASAQAKQLDIRKYEYYARLFQCYTETDKELDMLTLFRISNLVFNFIRINNLSYIIKKMQFNNGNIYKIAEKIKERVRITLDAMTDRRPVEPNENILNSITIKIKEIDLG |
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