NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187308_12915

Scaffold Ga0187308_12915


Overview

Basic Information
Taxon OID3300017469 Open in IMG/M
Scaffold IDGa0187308_12915 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12526
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080245Metagenome115N
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0187308_129152F081547GAGGMSYLRGVFVNFGEETYYLSCGIVKGGTLDPETYTVNNPELMMVRLGRDLYVVTNDLKQLIPIEPIKQLLSSETSKVYNEALSQGNEVRPA
Ga0187308_129153F087442GAGGMMREGLVKAGDLVIDCKPCYIAGTGFTKDDVYVVSEGTVVFKWYDKIALITVSEEGAKVTLLDILDVRFLVERNENCLVTKL
Ga0187308_129154F080245N/AMIFVWTAKVIMPGFRDEIFVSPALINSLAELTEDVYEVGMFAVPHAGYALLFLPTMVIKLDDDLLKKLEDTSIEDLNYPLNTIDHVFT
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