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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017469 Open in IMG/M |
| Scaffold ID | Ga0187308_13214 Open in IMG/M |
| Source Dataset Name | Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Stanford University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10239 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | YNP, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.428 | Long. (o) | -110.5885 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F056742 | Metagenome / Metatranscriptome | 137 | Y |
| F070317 | Metagenome / Metatranscriptome | 123 | Y |
| F077499 | Metagenome / Metatranscriptome | 117 | Y |
| F077502 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187308_1321410 | F056742 | N/A | MKLADCRYKCKQSYFRRSLFVRMFINEVEKVYAVKITSCEEFCKFYVIFLSVAEMLYGKHYNYAIFKAITRGRPNLYKCLKCDSILTTEESITHTLRHMKDLGYKPLAYNENI |
| Ga0187308_132146 | F070317 | AGAAGG | MTQTTVNNMSTMEELKELNLEKIVKDAQEGEECVINKILKGKLTDLIPLIRDPANLSQKAMDFIQSRGEDIFYLFQCTTRQGRNIKLLVRQSFDPRSTFYNLMKKYKTLKVGDNINVFYNPEKRRYDFLL |
| Ga0187308_132147 | F077502 | GAG | MTDVAHIVIWIDKNLPQEGKLSEIIDNLFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQNIGTLTEKVKEQVDDYFFKKLNDIYDKYYS |
| Ga0187308_132149 | F077499 | AGG | MADLFVFPNESLKPVNYPHITNAEIIFILTITVPIAEHPNADAPMDEKMIFLSTYMPLEFQKMQYMKTIDRALDILKYSLYSREDNVLFEIANKINDMYDVKELVNKVKDVECTKDLGQIKVTLTEAKRYIYPDLSLSKHASAQAKQLGIRKYEYYARVFQCYIDQDKDLDMLTLFRVSNTIYNYIRLNNLSNLVKKMQFKNDKIAQLMEKIKQRMRITLEAMTNRKHIEPNEDILNSITIRIKEIDLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |