Scaffold Ga0187308

Basic Information
Taxon OID	3300017469 Open in IMG/M
Scaffold ID	Ga0187308_14764 Open in IMG/M
Source Dataset Name	Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Stanford University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17693
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (60.71%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

17693

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (60.71%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location Name	YNP, Wyoming, USA
Coordinates	Lat. (^o)	44.428	Long. (^o)	-110.5885	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

YNP, Wyoming, USA

Coordinates

Lat. (^o)

44.428

Long. (^o)

-110.5885

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F011233	Metagenome / Metatranscriptome	293	N
F021133	Metagenome / Metatranscriptome	220	N
F026309	Metagenome / Metatranscriptome	198	Y
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1476413	F026309	AGGTGG	MSLPAPLNNPNLFIGLVIFVVASILLYLGKLPLSAWTTIVGVLLGYYFGYQHGVYVQKSGRNG
Ga0187308_1476418	F067921	GGGGG	MYFERINDKILRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTGDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPILPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIIISPDNYPGLVSLSYKEIYGG
Ga0187308_1476419	F027904	GGTGG	MEKYNPPEYDLFNLNNGSTLVGTSSVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPANSAVTLDEDEWSISVKSGYSLAAVSSAANSANVFVKAYFVKGTGSPI
Ga0187308_1476421	F011233	AGCAGG	MTIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGEFPGYFVSAAVGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIVPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPTSTSAGVPPRFVANEVVSTRLPIKVS
Ga0187308_1476422	F006070	AGG	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANADLSVQVIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSPVTVASGSLQQPGVQTVQADFYTTSAERYISLALTYSTAPSAGFVRAHIDLFYEGF
Ga0187308_1476424	F011097	GGAGG	MIRDVPLYTSGGTDPFTSITGVSTGGSPITGNGSNYQVLSFHPNYARLHIYITSLSGTSPSIQFTVGSYVGANYYTLPPITSPQYVYVVGNEDKTIITYLNTSNAVLQQVELPYNIFLNGAYVSWTVSGTSPSISAYIHFEFEDEEEGGE
Ga0187308_1476425	F008949	AGGAGG	MSSQTVKLGTQTITPKVEDLGNSYYIEFQVKITKYLNNSTNQTIDVKFTCNKYKQVVLPSANPLSPPTVQTAQKTIQECVDEWYAQHKSVYEVA
Ga0187308_1476426	F076262	AGGTGG	MSFNPVIKGSYTLASPQTVSVAASGSATVSVSFTPLGAGSLYVYITLPTGVTAAISIGAQTVSLSSGSNQFLIPANVAIGNITINNSLTTATSVVVWALFIEVT
Ga0187308_1476427	F021133	N/A	MTKRDELIRQIYENGNYAIKKICEMEPNADMANFSATDCIIGSANTHLALEIAREKGYPQDVVEYLESQSKQEQWHCQLHIGKSPKPYDFKVAQKHREVLLKYGIYVWMGVMPLLGEKIALAKAICWRRSDDPHFANKFATVDEYYHTTYPLLLLYKYATEEELEKIVELQKEYIEKIFGLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187308_14764

Overview

Ecosystem & Geography

Associated Families

Sequences