NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186467_1042860

Scaffold Ga0186467_1042860


Overview

Basic Information
Taxon OID3300017493 Open in IMG/M
Scaffold IDGa0186467_1042860 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Derwent River in Gse medium, 18 C, 35 psu salinity and 319 ?mol photons light - Alexandrium margalefii AMGDE01CS-322 (MMETSP0661)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameTasmania: Derwent River
CoordinatesLat. (o)43.03333Long. (o)147.36667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001618Metagenome / Metatranscriptome662Y

Sequences

Protein IDFamilyRBSSequence
Ga0186467_10428601F001618N/AAMILCDSAAPSLPPDVSAAAMWRPDAGPCVAQVAEWGSHPDDVEYMRLLKAMPKKILKRREIVCKDKDLEKATQKQGKVHFSICVWNLSEYSKSGGLGEEAASMVHVFYESKDERKVLNAFSSAGIDLESAEAVPVDPNSSLPHEQNVMYTKENLYLQDLYTWEEGAPLSADD
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