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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017497 Open in IMG/M |
| Scaffold ID | Ga0186404_1033357 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic communities from La Jolla, California in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 636 ?mol photons light - Kryptoperidinium foliaceum CCMP 1326 (MMETSP0120_2) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | National Center for Genome Resources |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 963 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Scripps Institute of Oceanography, pier, La Jolla, California | |||||||
| Coordinates | Lat. (o) | 32.9 | Long. (o) | -117.255 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016530 | Metatranscriptome | 246 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0186404_10333571 | F016530 | N/A | RLASPLPPNSSVQAPPIRAMPPKAVPDSVVAAGTPEGTPSTVTLPEDAWDMLGLGTPDAVSEKQLSVKNGQVILLTAGDWFASRANMEAQQREAYREQWQYEAEARLARIEAKKSPLEKSGEGLTTQKFAWSKDGQKAFEWRKIYHALCQFVGQTPDGGLITECVISPTAMRMYTDHRVMGSVVLPGVSHVSLMAATGSMGFPNPGGIAGDWHMSIKETLFERPYIVNSGAELIAAIQAGADPSQLGGGGGMQGAMLPVGVPMTYCRATSVSKERGQIKPTMDWAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |