Scaffold Ga0182743_1032744

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182743_1032744

Scaffold Ga0182743_1032744

Overview

Basic Information
Taxon OID	3300017548 Open in IMG/M
Scaffold ID	Ga0182743_1032744 Open in IMG/M
Source Dataset Name	Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft OP (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2356
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location Name	USA: Emeryville, California
Coordinates	Lat. (^o)	37.83	Long. (^o)	-122.29	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041209	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182743_10327442	F041209	AGCAG	MRRKLQKIATARILFLDETALRLNAAPTHTIVVPGEQPFVLATDTSSYAARYDMIAVCTGVETLLPKVFTPAERRGAEVRGVNSAMLHQFIDDTLAQAVEGLDRYPLTLVLDKATIHKNTDAIRQAFHDRGSQAIKDILLMPPNAAKRMSPLDNALFHDWKESCRKRCPVTKLTIQRVMADAWNRLTAEQLHSHYKHCGLVRGTDPYFDCPDPVGHAHRSA

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