NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182743_1062880

Scaffold Ga0182743_1062880


Overview

Basic Information
Taxon OID3300017548 Open in IMG/M
Scaffold IDGa0182743_1062880 Open in IMG/M
Source Dataset NameEnriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft OP (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1477
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034190Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0182743_10628801F034190N/ASWLELQDCRAPGLTPFVGESAAFPHIWAVLQHLIDTCGAFLNGDWCFLNAVLGLMSPSATHPCPICIVSHKSLLSSSRYRTPTDRHSLHPQQRPLLSIPPERIVPTPLHLFLGISNRIILEAFGELLGKDLVEAALKPVTTVHSAGCGGAADLHDLNGPEISKWVKKQCSANMLAAAASSSSPSAATKATHSILSRWLEQLHSSLLHCRDWTGDELESWRSVVDDIWQHWRAEAKTEPFPKLHMLRHSLEFAERHRFLGRASEAQIESFHASFNVFFHKHHLNQGGNTTERLRRSLADASLRAVQPLLCASSSAPSTAFQVF
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