NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182742_1000791

Scaffold Ga0182742_1000791


Overview

Basic Information
Taxon OID3300017651 Open in IMG/M
Scaffold IDGa0182742_1000791 Open in IMG/M
Source Dataset NameEnriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig MG (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45966
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001784Metagenome / Metatranscriptome635Y

Sequences

Protein IDFamilyRBSSequence
Ga0182742_100079110F001784GAGGMGEVIHANFGTEREWEQTHEKTVDGLLAIGSLFGDDEALMRAKADCVYHILREIVEDVPSVQITTRMPDNLSEEQLAMLTESIRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKVRPS

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