NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0134069_1021478

Scaffold Ga0134069_1021478


Overview

Basic Information
Taxon OID3300017654 Open in IMG/M
Scaffold IDGa0134069_1021478 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1939
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005560Metagenome / Metatranscriptome396N
F054748Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0134069_10214781F005560N/AWEILRGWMPAIVFAVIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTIVLFTPYIVESSWFISAVASASNSIPSLKETAVNFYTWSFGLARMDYSVKFVVSQLSAAFSSTAVSGLLLWRVKGTRNLMLALRRKK
Ga0134069_10214782F054748GGAMTTEETPRIDEPSKRLTEMILKGEDQESARIASEIVGGRSQTNDIVDAISETMNIVADLHEVERYTVQQVESCERAAESALNAIRPGLKVEQRRISGKVMVTSLHGDPHRFDKTLLLTMLEMGGFSALDGGEELSPEEVVRNVKNLKPDVLAIPLVTTSAVNDLLRTRSLLANSGVKTKLVTYGRGVAKLPSDSQLSAMEEDSLSILSRIAEILISR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.