NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134069_1049112

Scaffold Ga0134069_1049112


Overview

Basic Information
Taxon OID3300017654 Open in IMG/M
Scaffold IDGa0134069_1049112 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1325
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005023Metagenome / Metatranscriptome414Y
F047850Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0134069_10491121F047850AGGAGVIRSFVRRGSVLVLALALGACALTLDSTHLGVPVSLAGAAQRPDSGTPFRVTKRALYLLLGLVPVAQPNLEDVLAGQVGTGTRITNLRVK
Ga0134069_10491122F005023GAGGMKRTALTLALGLLATPAAAQWLGEPMWNDPTAGTGFTIYGDYSRPNSNARGGTAFGGRVALGAGIFTLTGGVASWDPDLVSQRLLSVGGTAAFRLIGGSLIPVAVNLQLGGGHSFEITSATTTLPLQTMLHAAVGLSVPLPTPVVSIEPFVSPGIRYHHYSNVAPGAPDHEVHFGWVIGGVVGVGPIGIHVAYDSEKFDDGTTHSVFGIGANLGLRP
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