NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134069_1058594

Scaffold Ga0134069_1058594


Overview

Basic Information
Taxon OID3300017654 Open in IMG/M
Scaffold IDGa0134069_1058594 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1219
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002499Metagenome / Metatranscriptome553N
F017459Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0134069_10585942F017459GGTGGMVRKGNKPRSSQASSKSTSSGLAEARRLLAIVEKSQVPFGESAPIFAKIKTQIDSGKSLSVEDHEHLLRLVKIAKDWNKAEESSAMTEPDETLSG
Ga0134069_10585943F002499N/AFQLSVSYWFDLVLQGMGGPIRDWVYDFLDKKGIKRDDIPARFGDVVKILHERLGTSARVIAYRTMVELYKEFSLTANFDYEDSIEDRFVFLKERVLADRLHPTRTPSLKLAF
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Institute for Fundamental Biomedical Research
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