NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134069_1122509

Scaffold Ga0134069_1122509


Overview

Basic Information
Taxon OID3300017654 Open in IMG/M
Scaffold IDGa0134069_1122509 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)857
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028131Metagenome / Metatranscriptome192Y
F035261Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0134069_11225091F028131AGGAMTPQVRPAGTVSVSETAPENPPTAVMVIVDVVVWPTFADAGDVAVIVKSCATVN
Ga0134069_11225093F035261N/AVTVAECDREPLVPVTVTITVPAAVKVHDSAEVPEPPVTVAGVRVQAKLSETSATLLANPFTGETVIVDVPAEFTTTETAVGLAETEKSGRPVTV

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