Scaffold Ga0134112

Basic Information
Taxon OID	3300017656 Open in IMG/M
Scaffold ID	Ga0134112_10000899 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017656 Open in IMG/M

Scaffold ID

Ga0134112_10000899 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8528
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

8528

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)	Depth (m)	.4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Angelo Coastal Reserve, California

Coordinates

Lat. (^o)

39.7181

Long. (^o)

-123.6527

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F044399	Metagenome	154	N
F102958	Metagenome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134112_100008996	F044399	N/A	LLSLTPWNILRAALLAFFPWAPAYLFERADFWFAQTNNGYWYYQFSSTRLEANLVSFALGGILVVYLLRPRWAVIQVFLSASLIYVLFYLACPTYMAGPIWRSECYSLGPDGLAGVRLCAMMFSFGAVPAIVRASYKEGKLNKRLRPWIAIFGAFITSIVTTWFPLTAWFSGVTYLSPLVPFQAALLFGVAEMAAGMQAAKISRSILVAAATGVTSALLLSGFLWPLLCPSCDRSLLFLIVPAWGFFALVGGVLELGLPRKLSVGPLRQFNPRLEDIRRVGLAVVLLFSLWTLVSFDFWDPNVLYSTNISPGPGRLTLGAPTYPYVAGYYNSTQYRICCVQIGASFTKVDLNALAPNNFLMAGMGVQSPNCCIDGWDFGWRADLFILANGTRVVSGSTWETCDGNANCGGVMWQHLRYHAQQTINPANISTPVYLRMMWQYDQPNWHADWYYNHTGQPWTKFGSFVPDFREGHYFDIGVVGVGNYPLAYAFFYQFGVASKTPVPGWSVQLLYPSFVHPDGSWRLMERANIIQGWHSYWKANYRWGGEPYNGVSAQANASDNTVSIGILQLTYSGTGTLPEKTVLW
Ga0134112_100008999	F102958	N/A	LRLRAIHLLAGLAFLALLLPSPVKAQTASSVFQTGLVTEKSSYKFNEVVYAQLILYNPTPQRITVHFSGRCWFSFVVRDMLGSLIHNETWSDCGPDINGYENTTNVMTVDPGGGRWTPLSWNQLDSMGKHVPVPADYVLSWSFKNPDQPIPEASKTIALTDRVQSPLEAFSASAFRFLQNFVPLVWFVGFVGTIPWSRALKDTKRSARLKIFIPTAVSGIAIFSIMLGFYSNQLLCLAIQCPGTISLINSMNVYLLITPVVWAILFLAGRMVPQKMMWLPLVIFESWTLSILAIAFFVLSSAQELWRNTFYYDWTVMWPSYALILANIPAQLIFYRAFKKKLLSTAPFIPVVKSPPWPTFPDKNEAGQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134112_10000899

Overview

Ecosystem & Geography

Associated Families

Sequences