NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134112_10004041

Scaffold Ga0134112_10004041


Overview

Basic Information
Taxon OID3300017656 Open in IMG/M
Scaffold IDGa0134112_10004041 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4618
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y
F010154Metagenome / Metatranscriptome307N

Sequences

Protein IDFamilyRBSSequence
Ga0134112_100040411F010022N/ASSPRPGNPQPPWIRSPGRSLIVGLMLSSGTVMRKNILVVAFAMLALALLFGVSYPPAFLFVVLFGIPISILNTILGLITRTPPGLEFQPESAKIRLIIDRGVVRASIYQLVFLNSKLILKRLTSVMVTVILALVLAVVGFEVLGIIGALMGGVTGFSLQEFLTQRMRNKIGTEMQLTSLGKNDIEIEYNDLLEVRLVKSRLHLISENGSLTANFPGGYAIKIKPMLADLFETKFTTEESLRAAEAAEKENEKRQHPGSDRGKFSRR
Ga0134112_100040414F010154GGAGVFASFQTAPSNGPNTPLGWASFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKAYLWTEVVFRTLLAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLDRIFDLKPIMED
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