NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134074_1020831

Scaffold Ga0134074_1020831


Overview

Basic Information
Taxon OID3300017657 Open in IMG/M
Scaffold IDGa0134074_1020831 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2163
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063430Metagenome129N
F068627Metagenome124Y
F068642Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0134074_10208312F068627AGGVTVGERNDRGLRLERSSATAGAIEPLLTAAEVGRLLAIPTKRVYEVVGHLAIQLAPHTLRWRLSDIAALIEERRRNK
Ga0134074_10208313F063430AGGMGRARPDLIRVLEENPPSPYAGITLVRRVRTREYRTEIGPRGYLSQIEAAAFLGKSVMAVNRYVRLGLLRDTTRYGISMIQLVELRRFQREYLEGGKGGRLRRGVGAERRRANRS
Ga0134074_10208314F068642GGAGGMRTRSVNEIPEALRRHNEEQQRDPQEVVGNLGSRIRVVVLWRQRDDDPEQWIYLERMPPGEFSYEMVKQRWGRGAYRIRLFGAWDRARRQERYITQVAFWIWDGFPPTPALRARLRRAESIR

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