Scaffold Ga0134083_10005963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134083_10005963

Scaffold Ga0134083_10005963

Overview

Basic Information
Taxon OID	3300017659 Open in IMG/M
Scaffold ID	Ga0134083_10005963 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3895
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023811	Metagenome	208	Y
F041660	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134083_100059634	F023811	GGA	LLLRPRTGEAIGSVFFAFIATGLIVLVYNLDPVSNWILLAGIWAGSEVVILYLLQNQRQNEKEFQKHPVSFPNPEGGGIVGEYVMRPWQNELAELGQRYPRKKSKRQKRKD
Ga0134083_100059635	F041660	AGGA	MVSHETKRILGIGSLVLILIVLLVRILPVPFPGSHPFAFPRKPGGPSPYTPALIFNDTVSVASGTPTFNLSLTQSHSYMWRFNVTIGSVKINLTDPKTGSVFWTVGPRSTGQWRLNGTGFVSFNWTAPASTYYSLVLENQNLSSWSSNGFLYTSPYSSCDIHVWDLNLFIPTWVIFA

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