NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134083_10187035

Scaffold Ga0134083_10187035


Overview

Basic Information
Taxon OID3300017659 Open in IMG/M
Scaffold IDGa0134083_10187035 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)850
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008484Metagenome / Metatranscriptome332Y
F033236Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0134083_101870351F008484N/AMQTFTEPEFKLIRKLKGKPPQAVLQIKEPCPTHSVCNPLPVFRVYKIDDTSFEAQWNGYHQAGTKQVFRFDEAGQ
Ga0134083_101870352F033236AGGAGGMVELRFRIRNNVFNAQAAVRRATIRPLALCFPSVEEAALIGEVDETGRVVPRRGVFFMTNLRTGPVIEGFEDCALGEFVRAQL

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