Scaffold Ga0182233_1036256

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182233_1036256

Scaffold Ga0182233_1036256

Overview

Basic Information
Taxon OID	3300017680 Open in IMG/M
Scaffold ID	Ga0182233_1036256 Open in IMG/M
Source Dataset Name	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_07NOV2016_LD1 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	868
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009610	Metagenome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182233_10362562	F009610	AGG	MSNHVSVRLEMVLVSVQDSCMICAKRTIGSETVLDAPDGTLGDTGHVESRFGLFGDGVSVDAR
Ga0182233_10362563	F009610	AGG	MLNHVLVCLEMVLVSMQDSSMVCAKRTIGLETVLDAPMVLLGDEAQVQARFGLFRDSSSLDAR

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