Scaffold Ga0187310_12282

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187310_12282

Scaffold Ga0187310_12282

Overview

Basic Information
Taxon OID	3300017696 Open in IMG/M
Scaffold ID	Ga0187310_12282 Open in IMG/M
Source Dataset Name	Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19622
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (42.42%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location Name	YNP, Wyoming, USA
Coordinates	Lat. (^o)	44.428	Long. (^o)	-110.5885	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069056	Metagenome / Metatranscriptome	124	N
F090627	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187310_1228228	F069056	AGAAGG	MSDTTSEPNIDISKVIMSSIINIKPQLDGTTEVHLSLSKILNEIIKVRGDFSVSKIVVDETKIYVYINIPRNLFGELQSLIQDTQTRMTMLKKSIFEMIGNVGSIGRVKDIIQQNDDGIIVITINSTLTPTAPGVRNEPTW
Ga0187310_1228229	F090627	AGG	MNLPGRLRIRIDGHVRVMLNGKVIYDDTNAITTQFLQYLQDMLQGTVPTVNSIYVLAKPNGTQINLNNLTFQNNYQQVNMIFLNQYVPQPIEALELWISTSVGNYPVAVLQFQSPITQSGELVVQWSISIQVPSIVQGAQVFGISDSIPQILMQLFIPQQYFSTPIQLTSTQPTLQIVSTPQVTPTFIAPSEAGVGAVAYITTSSTISTLSALLYLLGQYIMTVSQNNLNEQAVNSLIIASAFITLTSSNITSVVP

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