NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187310_12510

Scaffold Ga0187310_12510


Overview

Basic Information
Taxon OID3300017696 Open in IMG/M
Scaffold IDGa0187310_12510 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13851
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F063848Metagenome / Metatranscriptome129N
F070317Metagenome / Metatranscriptome123Y
F077499Metagenome / Metatranscriptome117Y
F085905Metagenome111N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187310_1251016F087445GGAGVQKLMSMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNSPKVREVVDSARRNRKPIDRLADMFMDMMETMLKSNAMSLTDEDKVKLKEKLKEVMESEE
Ga0187310_1251019F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSSTRRNQRAVNGFTVLKQVQSTVRDYLNEVSQTLKAPVIAQLAVEFIGIAMAYLKASNEGYNSYALTGRVAQIATLRATNIIHGTTLSCAQVGEIINGMLKKLSGVTTDPLTFTEEDGVCKATVANPLTKLSVASASTGYTVSLTDILKAKTPEEVLMAK
Ga0187310_125102F056742AGGVKLSDCRYRCKKSYFRRSLFVRMFINEVEKVYQVKVKSCEEFCKFYVLFLSVAEILYGKHYNYAIFKAISRGRPNLYACIKCNSTLTAEESITHTLQHMKQLGYKPLAYNENI
Ga0187310_1251020F085905GGAGGLSFPSSRLSQFDYVGMNAYWLNIRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDGLQNIMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQQVVARHLLPYSILEVIRRYTKK
Ga0187310_125103F077499AGGMADLFIFPNESLKPVSYPNITNAEIIFVLTISIPIGSHPESDTPMEEKVKFLSTYTPLEFQKIHYMKTIDKALDILKHFLYTREDNVLFEIANKINSLYDVKELINKVKDVECVKDLKTLNITLTEAKRYIYPDISLSKYASAQAKQLGIKKYEYYARLFQCYIETDKNLDMLTLFRVANLVFNFLRINNLSYIIKKMQFKDDNIGRIAEKIKQRVKITLDAMAERKTTEPDIDILNSITIKIKEIDLG
Ga0187310_125106F070317AGAAGGMTQETVNKMSALEEIKELNLERVVKDAQEGEVCVVNKILKGRLTDLMPLIRDPANMSQKAMDFIQSRGEDIFYLFQCTTRQGRNVKLLVRQSFDTRSTFYNLMKKYKTIKVGDEINVFYNPEKRRYDFLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.