NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187310_15887

Scaffold Ga0187310_15887


Overview

Basic Information
Taxon OID3300017696 Open in IMG/M
Scaffold IDGa0187310_15887 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7460
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y
F097670Metagenome / Metatranscriptome104Y
F099549Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187310_1588713F077497N/AMDKEAISKIEEIIEKHLFEEVNNTDYELKKMDIIVKYLIYQQLKELNNNLSLIDEVISSS
Ga0187310_1588714F087443N/AMGPKKNYWMVFGENDDVEYIDKEIAKASIELDKDILEMRALIFKAFVYDPEVRAKVIEYIKKNGQGSNQ
Ga0187310_158873F097670N/AMMNYKVFDKDIFFETDHIIIIDQKTGEIKYEEKRYFYDGKELKEIMNLDEYNLKLYETSQKIQEEYVKFTSKYTKPPIGYIIISNVIYEYMLNRNNVVLIAYANMSKVENEVSKEITNDTIKIILKTRTIFNKEWNFESIQNLSPEIKDNVTKIIEKALKGAMTILKKNT
Ga0187310_158877F099549N/AMDTTVQYAYQFSDLKTMFMIDFGNIIRQIVGLLTYSDISADTKTFDDEELKYKLRAAIGYALALLGSTLGYSMSAKTQVEVEAARQYLIALFDMIVTNPELTYIDLLNIYYDLIQKVSIILNYGTPIPQPRTGNYEIT
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