NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187310_16383

Scaffold Ga0187310_16383


Overview

Basic Information
Taxon OID3300017696 Open in IMG/M
Scaffold IDGa0187310_16383 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6242
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051270Metagenome144N
F069056Metagenome / Metatranscriptome124N
F090627Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0187310_163834F051270N/AMRIGIYGYLRIRELGKIVKNNINYQQLMPLLFQLLNNTLGNIIGANYIDIQGYGNNASVTVGTNTITFSASITVPNLNGFNAILYGYFNLGSNNYMIQLATINTTEQIPAGTYTFEWIINFTDSSGIIFNLMALSLTGNLKSVSVSFSPSPSQVTSAYTGNNITWYLGYQYNSVTIISSIEISVTLTNQSGSTSTYTNTQSVNYQGQALAIPFNIQVY
Ga0187310_163836F069056GGAGGMSEPKVDMNKVIMSSIVNIKPQPDNTTEVYLSLSRLFNEIMKVREGFSVYKIVVDETKVYVYINVPTNLFGDLQSLIQDAQTRMTILKKSILTMMGDLRQIGYVKDIIQQNDDGIIIIAINSTVTPTAPGVPNAPTW
Ga0187310_163837F090627AGGMHLPGRLRIRIDGHVRVMLNGKVIYDDTNAITTQFLQYLQDMLQGTVPTVNSIYVLAKPNGTQINLNNLTFQNNYQQVNMIFLNQYVPQPVEALELWISTSVGNYPVAVLQFQSPITQSGELVVQWSISIQVPSIVQGAQVFGISDSIPQILMQLFIPQQYFSTPIQLTSTQPTLQIVSTPQVTPTFIAPSEAGVGAVAYITTSSTISTLSALLYLLGQYIMTVSQNNLNEQAVNSLIIASAFITLTSSNITSVVP
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