NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180120_10013866

Scaffold Ga0180120_10013866


Overview

Basic Information
Taxon OID3300017697 Open in IMG/M
Scaffold IDGa0180120_10013866 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3817
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1043Long. (o)-76.1811Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F010001Metagenome / Metatranscriptome310Y
F055858Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0180120_100138662F055858N/AMPNSDDTYGTHNKQTKIISQTYDGSTALTSFANVAAAKTFYFTAEALTVMDECCTILEWALVADERGDNTKLKTTFAFGTKGTSSIAEADDWAGQYNSRKTTLRDADQWIKTGISTLIVFTDSSDHIV
Ga0180120_100138666F010001GAGMLDKESKAVIRKLEAQVGNLEVQNADYQQIVKELSDKLKLYENKYGTVFRPSRNTSNQK
Ga0180120_100138667F000464N/AMLRTYSHHDVDMDDLDGEFWPMMGILFSIWGSWTGVIHLIDWLTFDALVWWAEPFTIVPVIFLLIMKEKYDSLNPMHWWPMLWGYKAKLPDEDRITIRPLDTERIMQQHGGRLNVHIIDYEHIKFRRKKDAVIFGLKYF
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